miRBase entry: tca-mir-998

Stem-loop tca-mir-998


Accession
MI0016374
Description
Tribolium castaneum tca-mir-998 precursor miRNA


Sequence

gggacgcuuugccacuacguugUACUGAAUUUCAUGUGGGCugcuguuuugcgUAGCACCAUGGGAUUCAGCUCAucguuugguuaucugcuaacu
.....((...((((..(((.((..((((((((((((.(.(((((........))))).)))))))))))))..)).))).)))).....)).....

Structure
gggac  --uuu    cu   u  UA            U G     ugu 
     gc     gcca  acg ug  CUGAAUUUCAUG G GCugc   u
     ||     ||||  ||| ||  |||||||||||| | |||||    
     cg     uggu  ugc AC  GACUUAGGGUAC C CGAUg   u
ucaau  ucuau    -u   u  UC            - A     cgu 


Annotation confidence Not enough data
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Genome context
Unmapped45: 71481-71576 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-998
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-998-5p

Accession MIMAT0018852
Description Tribolium castaneum tca-miR-998-5p mature miRNA
Sequence 23 - UACUGAAUUUCAUGUGGGC - 41
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-998-3p

Accession MIMAT0018853
Description Tribolium castaneum tca-miR-998-3p mature miRNA
Sequence 54 - UAGCACCAUGGGAUUCAGCUCA - 75
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696