Stem-loop sequence tca-mir-1175

Accession

MI0016357 (change log)

Description

Tribolium castaneum miR-1175 stem-loop

Gene family

MIPF0000715; mir-1175

Stem-loop

   cgcuu   u       ugu     a  -     c   g uc   u    uggu 
5'      uga cgagcuc   aaagu ag uggag agu g  ucu cacu    u
        ||| |||||||   ||||| || ||||| ||| |  ||| ||||     
3'      auu gcucgag   uuuua uc accuc uca c  aga guga    u
   gcaac   u       -uu     c  u     c   a uu   -    uauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG4: 9316972-9317076 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-1175

• tca-mir-750: ChLG4: 9316826-9316917 [+]
• tca-mir-1175: ChLG4: 9316972-9317076 [+]

Database links

• EntrezGene:Mir1175
• miRBase Tracker:MI0016357

Mature sequence tca-miR-1175-5p

• Accession: MIMAT0018818
• Sequence: 25 - aaguggagcaguggucucuucac - 47
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS00004252ED_7070

Mature sequence tca-miR-1175-3p

• Accession: MIMAT0018819
• Sequence: 61 - ugagauucaacuccuccaucuc - 82
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS00000F4CCA_7070

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).