miRBase entry: tca-mir-279e

Stem-loop tca-mir-279e


Accession
MI0016356
Description
Tribolium castaneum tca-mir-279e precursor miRNA

Literature search
2 open access papers mention tca-mir-279e
(8 sentences)

Sequence

cgguggagcucucgguguaaGCCAGUGUUCAGUCUAUUGUUUCAcauugguuucgauugUGACUAGAUCGAACACUCGCUUGCaaccuggguuug
.....((((((..(((((((((.(((((((.(((((.....((((((((....))).))))).))))).))))))).)))))).))).)))))).

Structure
cggug      uc   -      C       A     UUGUU     -   g 
     gagcuc  ggu guaaGC AGUGUUC GUCUA     UCAca uug u
     ||||||  ||| |||||| ||||||| |||||     ||||| |||  
     uuuggg  cca CGUUCG UCACAAG UAGAU     AGUgu agc u
----g      -u   a      C       C     ----C     u   u 


Annotation confidence Not enough data
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Genome context
ChLG9: 11200-11294 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from tca-mir-279e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-279e-5p

Accession MIMAT0018816
Description Tribolium castaneum tca-miR-279e-5p mature miRNA
Sequence 21 - GCCAGUGUUCAGUCUAUUGUUUCA - 44
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-279e-3p

Accession MIMAT0018817
Description Tribolium castaneum tca-miR-279e-3p mature miRNA
Sequence 60 - UGACUAGAUCGAACACUCGCUUGC - 83
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696