miRBase entry: tca-mir-252b

Stem-loop tca-mir-252b


Accession
MI0016351
Description
Tribolium castaneum tca-mir-252b precursor miRNA

Literature search
1 open access papers mention tca-mir-252b
(4 sentences)

Sequence

gccucuuguccacccgguaUUAAGUAGUUGCGCCGAAGGUgauguuuuugaaaucUCCUCGGUCUGGCUGCUUUAuaccgcauggaugaaaauc
.....(((((((..((((((.(((((((((.(((((.((.(((.........))).))))))).))))))))).))))))..))))))).....

Structure
gccuc       cc      U         C     A  U   guu 
     uugucca  cgguaU AAGUAGUUG GCCGA GG gau   u
     |||||||  |||||| ||||||||| ||||| || |||   u
     aguaggu  gccauA UUCGUCGGU UGGCU CC cua   u
cuaaa       ac      U         C     -  U   aag 


Annotation confidence Not enough data
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Genome context
ChLG9: 6629979-6630072 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-252b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-252b-5p

Accession MIMAT0018806
Description Tribolium castaneum tca-miR-252b-5p mature miRNA
Sequence 20 - UUAAGUAGUUGCGCCGAAGGU - 40
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-252b-3p

Accession MIMAT0018807
Description Tribolium castaneum tca-miR-252b-3p mature miRNA
Sequence 56 - UCCUCGGUCUGGCUGCUUUA - 75
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696