Stem-loop tca-mir-252a

Accession

MI0016350

Description

Tribolium castaneum tca-mir-252a precursor miRNA

Gene family

MIPF0000285; mir-252

Literature search

1 open access papers mention tca-mir-252a
(4 sentences)

Sequence

aaagacuguccuguuaCUAAGUACUAGUGCCGCAGGaguacauucgaccuCCUGCUGCUCAAGUGCUUAUCaaugggcacagaauga
.....((((((((((..((((((((.(.((.(((((((..(....)..))))))).)).).))))))))..)))))).)))).....

Structure

aaaga    -      aC        A U  C       ua a 
     cugu ccuguu  UAAGUACU G GC GCAGGag  c u
     |||| ||||||  |||||||| | || |||||||  |  
     gaca ggguaa  AUUCGUGA C CG CGUCCuc  g u
aguaa    c      CU        A U  U       ca c 

Annotation confidence Not enough data

Genome context

ChLG9: 6637894-6637980 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-252a

Mature tca-miR-252a-5p

• Accession: MIMAT0018804
• Description: Tribolium castaneum tca-miR-252a-5p mature miRNA
• Sequence: 17 - CUAAGUACUAGUGCCGCAGG - 36
• Evidence: experimental ; SOLID [1]

Mature tca-miR-252a-3p

• Accession: MIMAT0018805
• Description: Tribolium castaneum tca-miR-252a-3p mature miRNA
• Sequence: 51 - CCUGCUGCUCAAGUGCUUAUC - 71
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696