miRBase entry: tca-mir-3862

Stem-loop tca-mir-3862


Accession
MI0016348
Description
Tribolium castaneum tca-mir-3862 precursor miRNA


Sequence

ugcaagguugcucgaaauUGGGCAAAAGUCCGCCUGAACAuuuuucuaauugUUCAGGCGCUCUUUUGCAUGACuuuggccaaccacaac
.....(((((.(((((.((..(((((((..((((((((((.((....)).))))))))))..)))))))..)).))))).))))).....

Structure
ugcaa     c     a  GG       UC          u  u 
     gguug ucgaa uU  GCAAAAG  CGCCUGAACA uu u
     ||||| ||||| ||  |||||||  |||||||||| ||  
     ccaac gguuu AG  CGUUUUC  GCGGACUUgu aa c
caaca     c     C  UA       UC          u  u 


Annotation confidence Not enough data
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Genome context
ChLG9: 13734517-13734606 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-3862
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3862-5p

Accession MIMAT0018800
Description Tribolium castaneum tca-miR-3862-5p mature miRNA
Sequence 19 - UGGGCAAAAGUCCGCCUGAACA - 40
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3862-3p

Accession MIMAT0018801
Description Tribolium castaneum tca-miR-3862-3p mature miRNA
Sequence 53 - UUCAGGCGCUCUUUUGCAUGAC - 74
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696