Stem-loop sequence tca-mir-92c

Accession

MI0016341 (change log)

Description

Tribolium castaneum miR-92c stem-loop

Gene family

MIPF0000013; mir-25

Literature search

1 open access papers mention tca-mir-92c
(7 sentences)

Stem-loop

   uuua   -        --  a  --a     c  u    ug     u    u      a    uuau 
5'     cuu aacauuuu  cg gg   uggaa gg cggu  ggucg gauu gugcaa uaug    u
       ||| ||||||||  || ||   ||||| || ||||  ||||| |||| |||||| ||||     
3'     gag uugugggg  gc cc   accuu uc guca  ccggc cuga cacguu auac    u
   -agg   g        cc  a  agg     c  -    gu     c    c      -    uugc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG7: 1764467-1764594 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir92c
• miRBase Tracker:MI0016341

Mature sequence tca-miR-92c-5p

• Accession: MIMAT0018786
• Sequence: 36 - gggucgugauuugugcaaa - 54
• Evidence: experimental; SOLID [1]

Mature sequence tca-miR-92c-3p

• Accession: MIMAT0018787
• Sequence: 71 - uauugcaccagucccggccugac - 93
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS0000338E9A_7070

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).