miRBase entry: tca-mir-3851e

Stem-loop tca-mir-3851e


Accession
MI0016338
Description
Tribolium castaneum tca-mir-3851e precursor miRNA
Gene family
MIPF0001201; mir-3851


Sequence

uguuugaauuuggcgccgCGUUGAUUUGGAGUCGUACUAUGguuuuugguacucacaUAGUACGUUCCGAAUCGACUAGuuaacaaauuuuaaau
.(((((((((((.......((((((((((((.(((((((((..............))))))))))))))))))))).......)))).)))))))

Structure
u       -    gcgccgC            U         guuuuu 
 guuugaa uuug       GUUGAUUUGGAG CGUACUAUG      g
 ||||||| ||||       |||||||||||| |||||||||       
 uaaauuu aaac       CAGCUAAGCCUU GCAUGAUac      g
-       u    aauuGAU            -         acucau 


Annotation confidence Not enough data
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Genome context
ChLG6: 8930351-8930445 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from tca-mir-3851e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851e-5p

Accession MIMAT0018780
Description Tribolium castaneum tca-miR-3851e-5p mature miRNA
Sequence 19 - CGUUGAUUUGGAGUCGUACUAUG - 41
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3851e-3p

Accession MIMAT0018781
Description Tribolium castaneum tca-miR-3851e-3p mature miRNA
Sequence 58 - UAGUACGUUCCGAAUCGACUAG - 79
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696