miRBase entry: tca-mir-3049

Stem-loop tca-mir-3049


Accession
MI0016336
Description
Tribolium castaneum tca-mir-3049 precursor miRNA

Literature search
1 open access papers mention tca-mir-3049
(2 sentences)

Sequence

augugguggaacgauacgauggugagugggggcgcagggacaugggggcgccacauggggUCGGGAAGACAGUUGCGGCGGAuuucguuuuuucaagUCCGUUCGCUGCAUUCCCagcccggugucgugccgaggcagcaagggggcgcucaggcuaggagguuguuuaca
.....(((.((((((....((((...((((.((.(.......((..(((((.((((.((((.(((((..((((...(((((((((.(......)))))))))).))))..))))).)))).)))).)))))....))......).)).)))).))))....))))))))).

Structure
augug   g      acga    gag    g  g agggaca  --gg     c    g    C     GA    UGC         c uu 
     gug aacgau    uggu   uggg gc c       ug    ggcgc acau gggU GGGAA  CAGU   GGCGGAuuu g  u
     ||| ||||||    ||||   |||| || |       ||    ||||| |||| |||| |||||  ||||   ||||||||| |   
     cau uuguug    aucg   acuc cg g       ac    ccgug ugug cccg CCCUU  GUCG   UUGCCUgaa c  u
----a   -      gagg    --g    g  g -ggaacg  ggag     c    g    a     AC    --C         - uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG6: 4999022-4999192 [+]

Database links

Mature tca-miR-3049-5p

Accession MIMAT0018776
Description Tribolium castaneum tca-miR-3049-5p mature miRNA
Sequence 61 - UCGGGAAGACAGUUGCGGCGGA - 82
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3049-3p

Accession MIMAT0018777
Description Tribolium castaneum tca-miR-3049-3p mature miRNA
Sequence 98 - UCCGUUCGCUGCAUUCCC - 115
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696