miRBase entry: tca-mir-3851a-2

Stem-loop tca-mir-3851a-2


Accession
MI0016330
Description
Tribolium castaneum tca-mir-3851a-2 precursor miRNA
Gene family
MIPF0001201; mir-3851

Literature search
1 open access papers mention tca-mir-3851a-2
(1 sentences)

Sequence

cggacgaauuaugaauuuggcgcugAGUUGAUUUGGAGUAGUACUAUGguuuuggguacucacaUAGUACAUUCCGAAUCGACUCGuuaacaaauuuaaauucaacaa
.....(((((.((((((((..(.((((((((((((((((.((((((((..............)))))))))))))))))))))))).)..))))))))))))).....

Structure
cggac     a        gc c                A        guuuug 
     gaauu ugaauuug  g ugAGUUGAUUUGGAGU GUACUAUG      g
     ||||| ||||||||  | |||||||||||||||| ||||||||       
     cuuaa auuuaaac  u GCUCAGCUAAGCCUUA CAUGAUac      g
aacaa     -        aa u                -        acucau 


Annotation confidence Not enough data
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Genome context
ChLG5: 208878-208985 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from tca-mir-3851a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851a-5p

Accession MIMAT0018758
Description Tribolium castaneum tca-miR-3851a-5p mature miRNA
Sequence 26 - AGUUGAUUUGGAGUAGUACUAUG - 48
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3851a-3p

Accession MIMAT0018759
Description Tribolium castaneum tca-miR-3851a-3p mature miRNA
Sequence 65 - UAGUACAUUCCGAAUCGACUCG - 86
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696