miRBase entry: tca-mir-2944b

Stem-loop tca-mir-2944b


Accession
MI0016320
Description
Tribolium castaneum tca-mir-2944b precursor miRNA
Gene family
MIPF0001335; mir-2944


Sequence

acuucauuucgcauaaugcauuUAAGGAACUACAGGUGUGAUGUGugauuucauuaaacgUAUCACAGCCGUAGUUGCCUUACuguauuugugaaaucucaa
.....((((((((.((((((..(((((((((((.(.((((((((((...........)))))))))).).)))))).))))).)))))))))))))).....

Structure
acuuc        u      uu     -      A G          gauu 
     auuucgca aaugca  UAAGG AACUAC G UGUGAUGUGu    u
     |||||||| ||||||  ||||| |||||| | ||||||||||    c
     uaaagugu uuaugu  AUUCC UUGAUG C ACACUAUgca    a
aacuc        -      -C     G      C G          aauu 


Annotation confidence Not enough data
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Genome context
ChLG5: 7174149-7174250 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-2944b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-2944b-5p

Accession MIMAT0018746
Description Tribolium castaneum tca-miR-2944b-5p mature miRNA
Sequence 23 - UAAGGAACUACAGGUGUGAUGUG - 45
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-2944b-3p

Accession MIMAT0018747
Description Tribolium castaneum tca-miR-2944b-3p mature miRNA
Sequence 61 - UAUCACAGCCGUAGUUGCCUUAC - 83
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696