miRBase entry: tca-mir-3846

Stem-loop tca-mir-3846


Accession
MI0016317
Description
Tribolium castaneum tca-mir-3846 precursor miRNA


Sequence

ggaauagaguuacuuccauugaugauaguaaaUGUUCUUGGCUUAUAAGUCUUUGUGUcaagaauauUGACCACAAUUACGUUGCCUCAaucaucgacgucaucaacugacauggcaacuaauucuccaau
(((...((((((.(((((((((((((.((..(((.....(((......((..(((((((((.....)))).)))))..))...))).....)))..)))))))))......)))).)).)))))))))...

Structure
---   aua      c  -    ------       a  aa   UUCUU   UUAUAA  CU     -    g 
   gga   gaguua uu ccau      ugaugau gu  aUG     GGC      GU  UUGUG Ucaa a
   |||   |||||| || ||||      ||||||| ||  |||     |||      ||  ||||| |||| a
   ccu   cuuaau aa ggua      acuacug ca  uac     CCG      CA  AACAC AGUu u
uaa   ---      c  c    caguca       -  gc   uaACU   ---UUG  UU     C    a 


Annotation confidence Not enough data
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Genome context
ChLG3: 15911874-15912004 [-]

Database links

Mature tca-miR-3846-5p

Accession MIMAT0018740
Description Tribolium castaneum tca-miR-3846-5p mature miRNA
Sequence 33 - UGUUCUUGGCUUAUAAGUCUUUGUGU - 58
Evidence experimental
SOLID [1]

Mature tca-miR-3846-3p

Accession MIMAT0018741
Description Tribolium castaneum tca-miR-3846-3p mature miRNA
Sequence 68 - UGACCACAAUUACGUUGCCUCA - 89
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696