Stem-loop sequence tca-mir-3843

Accession

MI0016313 (change log)

Description

Tribolium castaneum miR-3843 stem-loop

Stem-loop

   ugugg      ag    c                     gg  au 
5'      cugaca  uuuu aguuguugauguggcuuuagu  ag  u
        ||||||  |||| |||||||||||||||||||||  ||   
3'      ggcugu  aaaa uuaacgacuguaucgaaauua  uc  u
   uucug      aa    a                     ag  au 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG3: 15204456-15204547 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-3843

• tca-mir-3889: ChLG3: 15203725-15203820 [+]
• tca-mir-3841: ChLG3: 15203860-15203954 [+]
• tca-mir-3840: ChLG3: 15203983-15204073 [+]
• tca-mir-9c: ChLG3: 15204096-15204202 [+]
• tca-mir-2944a: ChLG3: 15204224-15204312 [+]
• tca-mir-279c: ChLG3: 15204345-15204456 [+]
• tca-mir-3843: ChLG3: 15204456-15204547 [+]

Database links

• EntrezGene:Mir3843
• miRBase Tracker:MI0016313

Mature sequence tca-miR-3843-5p

• Accession: MIMAT0018732
• Sequence: 19 - aguuguugauguggcuuuagug - 40
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS00005E64E1_7070

Mature sequence tca-miR-3843-3p

• Accession: MIMAT0018733
• Sequence: 55 - uuaaagcuaugucagcaauua - 75
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS000008B2CF_7070

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).