Stem-loop sequence tca-mir-3840

AccessionMI0016309 (change log)
DescriptionTribolium castaneum miR-3840 stem-loop
Stem-loop 
   cauca   -    c  ug   g         aa    g    auuu 
5'      gug aaug uu  uag ggguacugu  guac uacg    u
        ||| |||| ||  ||| |||||||||  |||| ||||     
3'      cac uugc aa  auc cucauggca  caug augc    u
   uuuga   a    -  gu   a         ag    -    aauu
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Tcas4.0) Overlapping transcripts
ChLG3: 15203983-15204073 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3840
tca-mir-3889ChLG3: 15203725-15203820 [+]
tca-mir-3841ChLG3: 15203860-15203954 [+]
tca-mir-3840ChLG3: 15203983-15204073 [+]
tca-mir-9cChLG3: 15204096-15204202 [+]
tca-mir-2944aChLG3: 15204224-15204312 [+]
tca-mir-279cChLG3: 15204345-15204456 [+]
tca-mir-3843ChLG3: 15204456-15204547 [+]
Database links

Mature sequence tca-miR-3840-5p

Accession MIMAT0018724
Sequence

19 -  

aggggguacuguaaguacgua

 - 39

Get sequence
Evidence experimental; SOLID [1]
Database links

Mature sequence tca-miR-3840-3p

Accession MIMAT0018725
Sequence

54 -  

uaguacgaacgguacucacuau

 - 75

Get sequence
Evidence experimental; SOLID [1]
Database links

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).