miRBase entry: tca-mir-3839

Stem-loop tca-mir-3839


Accession
MI0016308
Description
Tribolium castaneum tca-mir-3839 precursor miRNA


Sequence

auaaugagcgagauaguaguuuuguCACAGGAAAUUGCGAUAUGUUCGaauauuuuaugaACUUGUUGCCGUUUCCUACGUgcaaaauucgaaucaaugcuu
.....(((((.(((.(.(((((((.((((((((((.((((((.(((((((....)).))))).)))))).)))))))..)))))))))))..)))..)))))

Structure
auaau     -a   -a u       u   --       U      U     -  u 
     gagcg  gau  g aguuuug CAC  AGGAAAU GCGAUA GUUCG aa a
     |||||  |||  | ||||||| |||  ||||||| |||||| ||||| ||  
     uucgu  cua  c uuaaaac gUG  UCCUUUG CGUUGU CAagu uu u
-----     aa   ag -       -   CA       C      U     a  u 


Annotation confidence Not enough data
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Genome context
ChLG3: 5757862-5757963 [+]

Database links

Mature tca-miR-3839-5p

Accession MIMAT0018722
Description Tribolium castaneum tca-miR-3839-5p mature miRNA
Sequence 26 - CACAGGAAAUUGCGAUAUGUUCG - 48
Evidence experimental
SOLID [1]

Mature tca-miR-3839-3p

Accession MIMAT0018723
Description Tribolium castaneum tca-miR-3839-3p mature miRNA
Sequence 61 - ACUUGUUGCCGUUUCCUACGU - 81
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696