miRBase entry: tca-mir-3826

Stem-loop tca-mir-3826


Accession
MI0016287
Description
Tribolium castaneum tca-mir-3826 precursor miRNA
Gene family
MIPF0001217; mir-3817


Sequence

aggguugugauguaacuggggccgguuuCGAGGCGUGGUGGGCGGUAAUAUuaguaaaaauaauaCUAUCCCCGACUACGCCUCGGaauugguuuugguguuuucacacaaac
.....(((((....((((((((((((((((((((((((((((.((((.(((((.......))))).))))))).)))))))))))))))))))))))))....))))).....

Structure
agggu     ugua                         -   C    A     gu 
     uguga    acuggggccgguuuCGAGGCGUGGU GGG GGUA UAUua  a
     |||||    ||||||||||||||||||||||||| ||| |||| |||||  a
     acacu    ugguuuugguuaaGGCUCCGCAUCA CCC CUAU auaau  a
caaac     uuug                         G   -    C     aa 


Annotation confidence Not enough data
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Genome context
ChLGX: 5786920-5787032 [-]
Clustered miRNAs
36 other miRNAs are < 10 kb from tca-mir-3826
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3826-5p

Accession MIMAT0018680
Description Tribolium castaneum tca-miR-3826-5p mature miRNA
Sequence 29 - CGAGGCGUGGUGGGCGGUAAUAU - 51
Evidence experimental
SOLID [1]

Mature tca-miR-3826-3p

Accession MIMAT0018681
Description Tribolium castaneum tca-miR-3826-3p mature miRNA
Sequence 66 - CUAUCCCCGACUACGCCUCGG - 86
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696