miRBase entry: tca-mir-3821

Stem-loop tca-mir-3821


Accession
MI0016281
Description
Tribolium castaneum tca-mir-3821 precursor miRNA


Sequence

auguauguguugcaauuuAGCAUCCUCCUCUUAGGAAUUUuauauuugagaaAUUUCUAGUGAGUGAGGAUGUUAauuuuuggcacaaauca
.....(((((((.((.(((((((((((((((((((((((((........))))))))))).))).))))))))))).)).))))))).....

Structure
augua       c  u           -   -           aua 
     uguguug aa uuAGCAUCCUC CUC UUAGGAAUUUu   u
     ||||||| || ||||||||||| ||| |||||||||||    
     acacggu uu aAUUGUAGGAG GAG GAUCUUUAaag   u
acuaa       u  u           U   U           agu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLGX: 5795772-5795863 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from tca-mir-3821
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3821-5p

Accession MIMAT0018668
Description Tribolium castaneum tca-miR-3821-5p mature miRNA
Sequence 19 - AGCAUCCUCCUCUUAGGAAUUU - 40
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3821-3p

Accession MIMAT0018669
Description Tribolium castaneum tca-miR-3821-3p mature miRNA
Sequence 53 - AUUUCUAGUGAGUGAGGAUGUUA - 75
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696