miRBase entry: tca-mir-3814

Stem-loop tca-mir-3814


Accession
MI0016272
Description
Tribolium castaneum tca-mir-3814 precursor miRNA


Sequence

uucucuuuguugaaaguuUACAAUUUAGCGCUCUAUUCuaguuaaauuuuacacUAGCAUGAGCGUUUGUUGuagauuuuuggcaaaaauuu
.....(((((((((((((((((((..(((((((.((.(((((..........))))).))))))))).))))))))))))))))))).....

Structure
uucuc                   UU       U  U     uaaa 
     uuuguugaaaguuUACAAU  AGCGCUC AU Cuagu    u
     |||||||||||||||||||  ||||||| || |||||     
     aaacgguuuuuagauGUUG  UUGCGAG UA GAUca    u
uuuaa                   -U       -  C     cauu 


Annotation confidence Not enough data
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Genome context
ChLGX: 5794132-5794223 [-]
Clustered miRNAs
30 other miRNAs are < 10 kb from tca-mir-3814
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3814-5p

Accession MIMAT0018652
Description Tribolium castaneum tca-miR-3814-5p mature miRNA
Sequence 19 - UACAAUUUAGCGCUCUAUUC - 38
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3814-3p

Accession MIMAT0018653
Description Tribolium castaneum tca-miR-3814-3p mature miRNA
Sequence 55 - UAGCAUGAGCGUUUGUUG - 72
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696