miRBase entry: tca-mir-3805a

Stem-loop tca-mir-3805a


Accession
MI0016262
Description
Tribolium castaneum tca-mir-3805a precursor miRNA


Sequence

uuuuguccaagcucaaguccGAUCACAUGUGGGUCGUAuauuuucaauauuaucauaaUAUAUGUCUCGCAUCUGACGGUCuugggguggguuguu
.....((((..((((((.(((.(((.(((((((.((((((((..............)))))))).))))))).)))))).)))))).)))).....

Structure
uuuug    ag      u   A   C       U        uucaau 
     ucca  cucaag ccG UCA AUGUGGG CGUAuauu      a
     ||||  |||||| ||| ||| ||||||| ||||||||       
     gggu  ggguuC GGC AGU UACGCUC GUAUAUaa      u
uuguu    -g      U   -   C       U        uacuau 


Annotation confidence Not enough data
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Genome context
ChLGX: 5783347-5783442 [-]
Clustered miRNAs
28 other miRNAs are < 10 kb from tca-mir-3805a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3805a-5p

Accession MIMAT0018632
Description Tribolium castaneum tca-miR-3805a-5p mature miRNA
Sequence 21 - GAUCACAUGUGGGUCGUA - 38
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3805a-3p

Accession MIMAT0018633
Description Tribolium castaneum tca-miR-3805a-3p mature miRNA
Sequence 59 - UAUAUGUCUCGCAUCUGACGGUC - 81
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696