miRBase entry: mghv-mir-M1-13

Stem-loop mghv-mir-M1-13


Accession
MI0016253
Description
Mouse gammaherpesvirus 68 mghv-mir-M1-13 precursor miRNA


Sequence

UGGGAAGAGUCUGUUGAGUGGCcgcguagguuguaagcUAUCUCAUGUGAGCUCUUCUUU
.((((((((((...((((((((.(((.....)))..)))).))))...)).)))))))).

Structure
U        -  UGU    -    -c   u 
 GGGAAGAG UC   UGAG UGGC  gcg a
 |||||||| ||   |||| ||||  ||| g
 UUCUUCUC AG   ACUC AUcg  ugu g
U        G  UGU    U    aa   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
U97553: 3749-3808 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from mghv-mir-M1-13
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mghv-miR-M1-13-5p

Accession MIMAT0018172
Description Mouse gammaherpesvirus 68 mghv-miR-M1-13-5p mature miRNA
Sequence 1 - UGGGAAGAGUCUGUUGAGUGGC - 22
Evidence experimental
454 [1], Illumina [2], Northern [2], RT-PCR [2]

Mature mghv-miR-M1-13-3p

Accession MIMAT0018173
Description Mouse gammaherpesvirus 68 mghv-miR-M1-13-3p mature miRNA
Sequence 39 - UAUCUCAUGUGAGCUCUUCUUU - 60
Evidence experimental
454 [1], RT-PCR [1]

References

  1. PubMed ID: 20668074
    Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
    "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
    "J Virol (2010) 84:10266-10275

  2. PubMed ID: 20660200
    Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts
    "Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW"
    "J Virol (2010) 84:10344-10353