Stem-loop sequence ame-mir-3801

Accession

MI0016218 (change log)

Description

Apis mellifera miR-3801 stem-loop

Stem-loop

   auu     -c   acag     ag   u  gguac     g  a    g agg        aa   -----ag    a 
5'    ggauc  ggu    uguac  uuu gc     aaauc cg uuga a   cgagccgu  ugc       gcgu u
      |||||  |||    |||||  ||| ||     ||||| || |||| |   ||||||||  |||       ||||  
3'    ucugg  ccg    gcaug  aga cg     uuugg gc gacu u   gcuuggca  acg       ugca g
   ---     uu   ----     ga   u  agcua     g  -    g --a        --   cuaacaa    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000055.5: 11825440-11825579 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir3801
• RNAcentral:URS000075C733_7460
• miRBase Tracker:MI0016218

Mature sequence ame-miR-3801-5p

• Accession: MIMAT0018588
• Sequence: 36 - aaucgcgauugagaaggcgagc - 57
• Evidence: experimental; SOLID [1]

References

1. PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).