Stem-loop sequence ame-mir-279b

Accession

MI0016201 (change log)

Description

Apis mellifera miR-279b stem-loop

Literature search

3 open access papers mention ame-mir-279b
(5 sentences)

Stem-loop

   aaa    u    aau  u  a     gu            a     - -       gca   uugua 
5'    uguu guga   uu au cucuu  uauuagggacga guauu c aucuagu   acg     a
      |||| ||||   || || |||||  |||||||||||| ||||| | |||||||   |||      
3'    acaa uacu   aa ua gagag  auaaucccugcu cauaa g uagauca   ugc     a
   --a    c    aau  c  a     --            -     a c       --g   uaaag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000066.5: 1395401-1395527 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ame-mir-279b

• ame-mir-3478: CM000066.5: 1395549-1395626 [+]
• ame-mir-3791: CM000066.5: 1395544-1395636 [-]
• ame-mir-279b: CM000066.5: 1395401-1395527 [-]
• ame-mir-9c: CM000066.5: 1395236-1395374 [-]
• ame-mir-2944: CM000066.5: 1395048-1395172 [-]
• ame-mir-318: CM000066.5: 1394890-1395007 [-]

Database links

• EntrezGene:Mir279b
• RNAcentral:URS000075E489_7460
• miRBase Tracker:MI0016201

Mature sequence ame-miR-279b-3p

• Accession: MIMAT0018571
• Sequence: 75 - ugacuagaucgaaauacucguccc - 98
• Evidence: experimental; SOLID [1]

References

1. PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).