Stem-loop sequence ame-mir-3789

Accession

MI0016198 (change log)

Description

Apis mellifera miR-3789 stem-loop

Stem-loop

   -  g u  a    gg      uu g a   -   a  a  ug  ------     
5'  cc c cg acuc  cccucg  u g ccg gca ca au  gc      cgcc 
    || | || ||||  ||||||  | | ||| ||| || ||  ||      ||| g
3'  gg g gc uggg  gggagu  a u ggc cgu gu ua  cg      gcgc 
   u  g c  a    --      gg g -   u   g  c  gu  uaguac     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000065.5: 9663654-9663751 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir3789
• RNAcentral:URS000075CA28_7460
• miRBase Tracker:MI0016198

Mature sequence ame-miR-3789-3p

• Accession: MIMAT0018568
• Sequence: 62 - aucuggugcucggugaggugag - 83
• Evidence: experimental; SOLID [1], Illumina [2]

References

1. PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).
2. PMID:26853694 "MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)" Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL Insect Mol Biol. 25:216-226(2016).