Stem-loop sequence ame-mir-3780

Accession

MI0016188 (change log)

Description

Apis mellifera miR-3780 stem-loop

Stem-loop

   aa   cgu    agua    u    c    --ua  -  a   aacuuu   ua  -     u 
5'   cuc   cgag    uaac gcgg aucg    ac ug caa      ccg  gc ugcau u
     |||   ||||    |||| |||| ||||    || || |||      |||  || |||||  
3'   gag   gcuc    auug cgcc uagu    ug ac guu      ggc  cg gcgua a
   -a   auu    ----    u    u    gaaa  c  -   ---gcc   -c  u     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000067.5: 10263172-10263285 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir3780
• RNAcentral:URS000075C171_7460
• miRBase Tracker:MI0016188

Mature sequence ame-miR-3780-5p

• Accession: MIMAT0018558
• Sequence: 18 - aacugcggcaucguaacugac - 38
• Evidence: experimental; SOLID [1], Illumina [2]

References

1. PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).
2. PMID:26853694 "MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)" Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL Insect Mol Biol. 25:216-226(2016).