miRBase entry: ame-mir-3780

Stem-loop ame-mir-3780


Accession
MI0016188
Description
Apis mellifera ame-mir-3780 precursor miRNA


Sequence

aacuccgucgagaguauAACUGCGGCAUCGUAACUGACaaaacuuuccguagcugcauuuauaugcgugcccggccguugcacguaaagugauuccgcuguuacucguuagaga
..(((...((((....((((.((((.((((..........(((...(((..(((((((....))))).)).)))..)))..........)))).)))).))))))))...))).

Structure
aa   cgu    agua    U    C    UAACUGACaa   uuu   ua  -     u 
  cuc   cgag    uAAC GCGG AUCG          aac   ccg  gc ugcau u
  |||   ||||    |||| |||| ||||          |||   |||  || |||||  
  gag   gcuc    auug cgcc uagu          uug   ggc  cg gcgua a
-a   auu    ----    u    u    gaaaugcacg   -cc   -c  u     u 


Annotation confidence Not enough data
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Genome context
CM000067.5: 10263172-10263285 [-]

Database links

Mature ame-miR-3780-5p

Accession MIMAT0018558
Description Apis mellifera ame-miR-3780-5p mature miRNA
Sequence 18 - AACUGCGGCAUCGUAACUGAC - 38
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226