miRBase entry: ame-mir-193

Stem-loop ame-mir-193


Accession
MI0016138
Description
Apis mellifera ame-mir-193 precursor miRNA

Literature search
1 open access papers mention ame-mir-193
(1 sentences)

Sequence

agggucgaagagugaguaaauggccgagggugauuugggccuuagugguccugugguggcugcguacgaauccUACUGGCCUGCUAAGUCCCAAgugauucucggcucgcgcugcgaua
...((((.((.((((.......(((((((((.(((((((.((((((((.((.((((.((.(........))))))).)).)))))))).))))))).))))))))))))).)).)))).

Structure
agg    a  a    guaaaug         g       c        u  u    u  c gcg 
   gucg ag guga       gccgagggu auuuggg cuuagugg cc gugg gg u   u
   |||| || ||||       ||||||||| ||||||| |||||||| || |||| || |    
   uagc uc cgcu       cggcucuua ugAACCC GAAUCGUC GG CAUc cu a   a
--a    g  g    -------         g       U        C  U    -  - agc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000054.5: 204902-205020 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ame-mir-193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-193-3p

Accession MIMAT0018508
Description Apis mellifera ame-miR-193-3p mature miRNA
Sequence 74 - UACUGGCCUGCUAAGUCCCAA - 94
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670