miRBase entry: pab-MIR396c

Stem-loop pab-MIR396c


Accession
MI0016124
Description
Picea abies pab-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
1 open access papers mention pab-MIR396c
(5 sentences)

Sequence

aagccggagaaugcucucauauuuUUCCACGGCUUUCUUGAACUUcccgaucgggaguguuggcgacagaucgcaccgcuaacagauccgcauacgaagcucaagaaagccgugggaagaauauuaaagggauucaauuuuau
........((((.((((.(((((((((((((((((((((((.((((.....((((..((((((((...........))))))))..)))).....)))).))))))))))))).))))))))))...))))))))........

Structure
aagccgga    g    --c          -             A    ccgau    ag        acag 
        gaau cucu   auauuuUUCC ACGGCUUUCUUGA CUUc     cggg  uguuggcg    a
        |||| ||||   |||||||||| ||||||||||||| ||||     ||||  ||||||||    u
        cuua ggga   uauaagaagg ugccgaaagaacu gaag     gccu  acaaucgc    c
uauuuuaa    -    aau          g             c    cauac    ag        cacg 


Annotation confidence Not enough data
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Genome context
MA_10434401: 12107-12249 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR396c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR396c

Accession MIMAT0018154
Description Picea abies pab-miR396c mature miRNA
Sequence 25 - UUCCACGGCUUUCUUGAACUU - 45
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169