Stem-loop pab-MIR396a

Accession

MI0016122

Description

Picea abies pab-MIR396a precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention pab-MIR396a
(5 sentences)

Sequence

aaucccgccaugcucUUCCACAGCUUUCUUGAACUAagagucgaucggauccggucaguucagagCUCAAGAAAGCUGUGGGAAAacaugggcggauucg
(((((..(((((...(((((((((((((((((.((..((((.(((((....))))).))))..)).)))))))))))))))))...)))))..)))))..

Structure

--     cg     cuc                 A  Aa    c     g 
  aaucc  ccaug   UUCCACAGCUUUCUUGA CU  gagu gaucg a
  |||||  |||||   ||||||||||||||||| ||  |||| |||||  
  uuagg  gguac   AGGGUGUCGAAAGAACU ga  cuug cuggc u
gc     cg     aAA                 C  ga    a     c 

Annotation confidence Not enough data

Genome context

MA_5903755: 132-231 [+]

Mature pab-miR396a-5p

• Accession: MIMAT0018152
• Description: Picea abies pab-miR396a-5p mature miRNA
• Sequence: 16 - UUCCACAGCUUUCUUGAACUA - 36
• Evidence: experimental ; cloned [1], Illumina [2]

Mature pab-miR396a-3p

• Accession: MIMAT0037385
• Description: Picea abies pab-miR396a-3p mature miRNA
• Sequence: 66 - CUCAAGAAAGCUGUGGGAAA - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169


2. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918