Stem-loop sequence vvi-MIR3640

AccessionMI0016040 (change log)
DescriptionVitis vinifera miR3640 stem-loop
Literature search

1 open access papers mention vvi-MIR3640
(4 sentences)

Stem-loop 
           u g     c   c  a c          a  cc                          c       aaaggguaucuuucgauccuauag 
5' ggguauaa g aaugg acc ga g uguacacgug ca  accugauuggugaugcuuuuuuggua auauuga                        u
   |||||||| | ||||| ||| || | |||||||||| ||  |||||||||||||||||||||||||| |||||||                        a
3' cccauauu u uuacu ugg cu c acgugugcac gu  uggacuaacuacuacggaaaagcuau uaugacu                        u
           u g     c   a  - a          c  aa                          c       auauucguaugaggcccaaacuag
Get sequence
Deep sequencing
4878 reads, 300 reads per million, 2 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr16: 11986826-11987025 [+]
intergenic
Database links

Mature sequence vvi-miR3640-5p

Accession MIMAT0018053
Previous IDsvvi-miR3640*
Sequence

42 -  

accugauuggugaugcuuuuuugg

 - 65

Get sequence
Deep sequencing1445 reads, 2 experiments
Evidence experimental; Illumina [1]

Mature sequence vvi-miR3640-3p

Accession MIMAT0018054
Previous IDsvvi-miR3640
Sequence

136 -  

aucgaaaaggcaucaucaaucagg

 - 159

Get sequence
Deep sequencing3093 reads, 2 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis" Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Plant J. 62:960-976(2010).