Stem-loop sequence vvi-MIR3637

Accession

MI0016037 (change log)

Description

Vitis vinifera miR3637 stem-loop

Literature search

1 open access papers mention vvi-MIR3637
(1 sentences)

Stem-loop

   u    ug   a   u  ga    u                                                uguuuggauaguuugauuuugaaacugac 
5'  gaca  aug cau au  guaa auuuuauaaaauuaaggguauuuauguauuguguuuugucggaaaaua                             a
    ||||  ||| ||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||                              
3'  cugu  uac gua ug  uauu uaaaauauuuuaauucucguaaauacguaacacagaacagcuuuuuau                             u
   g    gu   c   -  ag    -                                                cauaauagguuauuaugucagccuuauau 

Deep sequencing

983 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (12X; GCA_000003745.2): chr16: 20659651-20659852 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016037

Mature sequence vvi-miR3637-5p

• Accession: MIMAT0018047
• Previous IDs: vvi-miR3637*
• Sequence: 44 - auuuauguauuguguuuugucgga - 67
• Deep sequencing: 664 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence vvi-miR3637-3p

• Accession: MIMAT0018048
• Previous IDs: vvi-miR3637
• Sequence: 137 - uuucgacaagacacaaugcauaaa - 160
• Deep sequencing: 307 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis" Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Plant J. 62:960-976(2010).