Stem-loop sequence vvi-MIR3631b

Accession

MI0016028 (change log)

Description

Vitis vinifera miR3631b stem-loop

Gene family

MIPF0001100; MIR3631

Literature search

2 open access papers mention vvi-MIR3631b
(4 sentences)

Stem-loop

                   -a      c    c  c          a                    a     c     cua   a 
5' gugguguuuguuuuuu  uuuuuu uauu ag uaaaaguaac uguugacaucauccaauaua cuaaa ugaac   uug u
   ||||||||||||||||  |||||| |||| || |||||||||| |||||||||||||||||||| ||||| |||||   |||  
3' caccacaaacaaaaaa  gaaaaa auaa uc auuuucauug auaacuguaguagguuguau gauuu acuug   aac a
                   cc      a    a  a          a                    c     u     ---   a 

Deep sequencing

747 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: low

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Genome context

• Coordinates (12X; GCA_000003745.2): chr5: 6430141-6430304 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016028

Mature sequence vvi-miR3631b-5p

• Accession: MIMAT0018031
• Previous IDs: vvi-miR3631b
• Sequence: 42 - cauguugacaucauccaauaua - 63
• Deep sequencing: 118 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence vvi-miR3631b-3p

• Accession: MIMAT0018032
• Previous IDs: vvi-miR3631b*
• Sequence: 103 - uguuggaugaugucaauaagu - 123
• Deep sequencing: 499 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis" Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Plant J. 62:960-976(2010).