Stem-loop sequence vvi-MIR477b

Accession

MI0016025 (change log)

Description

Vitis vinifera miR477b stem-loop

Gene family

MIPF0000216; MIR477

Literature search

2 open access papers mention vvi-MIR477b
(2 sentences)

Stem-loop

   gccaaca       uuucua   cu      uu u          u   a      gua 
5'        cgaggca      uug  cacucu  c caagggcuuc agc uugcca   a
          |||||||      |||  ||||||  | |||||||||| ||| ||||||   c
3'        gcucugu      aac  gugaga  g guuucugaag ucg aacggu   a
   cguauaa       --ugca   ag      gg -          c   -      aaa 

Deep sequencing

66 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (12X; GCA_000003745.2): chr2: 1237689-1237805 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016025

Mature sequence vvi-miR477b-5p

• Accession: MIMAT0018025
• Previous IDs: vvi-miR447b
• Sequence: 27 - acucuuucucaagggcuucuag - 48
• Deep sequencing: 10 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence vvi-miR477b-3p

• Accession: MIMAT0018026
• Previous IDs: vvi-miR447b*
• Sequence: 75 - cgaagucuuuggggagagugg - 95
• Deep sequencing: 56 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis" Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Plant J. 62:960-976(2010).