Stem-loop sequence vvi-MIR3629a

Accession

MI0016022 (change log)

Description

Vitis vinifera miR3629a stem-loop

Literature search

2 open access papers mention vvi-MIR3629a
(2 sentences)

Stem-loop

   u          cg                    a     ---u g  uuua     uuaucgacuuggauugugcugcuaguugcugcacauu 
5'  uuuuuuuucc  cauuuucucagcagccaagc gagug    g gg    agaga                                     u
    ||||||||||  |||||||||||||||||||| |||||    | ||    |||||                                     u
3'  aagaaaaagg  guaaaagagucgucgguuug uucac    u cc    ucucu                                     c
   a          au                    a     uauu g  ----     auguuuagguuugggucaaccuuggugaacuuugggu 

Deep sequencing

382 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (12X; GCA_000003745.2): chr13: 18253988-18254169 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016022

Mature sequence vvi-miR3629a-5p

• Accession: MIMAT0018021
• Previous IDs: vvi-miR3629a*
• Sequence: 12 - cgcauuuucucagcagccaag - 32
• Deep sequencing: 41 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence vvi-miR3629a-3p

• Accession: MIMAT0018022
• Previous IDs: vvi-miR3629a
• Sequence: 154 - ggcugcugagaaaauguagga - 174
• Deep sequencing: 187 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis" Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Plant J. 62:960-976(2010).