Stem-loop sequence vvi-MIR3623

Accession

MI0016015 (change log)

Description

Vitis vinifera miR3623 stem-loop

Literature search

1 open access papers mention vvi-MIR3623
(3 sentences)

Stem-loop

           u    a    ca       a             uaaagcucaaac      ac      c 
5' aagaauuu gaug ucuu  caaguuc uccaagcaccauc            aggccu  gguuuu u
   |||||||| |||| ||||  ||||||| |||||||||||||            ||||||  ||||||  
3' uucuugaa uuac agaa  guuuaag agguucgugguag            uucgga  ucaaaa u
           -    a    uc       c             ------uacuua      --      c 

Deep sequencing

31869 reads, 2.1e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (12X; GCA_000003745.2): chr18: 24650012-24650140 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016015

Mature sequence vvi-miR3623-5p

• Accession: MIMAT0018007
• Previous IDs: vvi-miR3623*
• Sequence: 18 - ucacaaguucauccaagcacca - 39
• Deep sequencing: 17784 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence vvi-miR3623-3p

• Accession: MIMAT0018008
• Previous IDs: vvi-miR3623
• Sequence: 92 - uggugcuuggacgaauuugcua - 113
• Deep sequencing: 14083 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis" Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Plant J. 62:960-976(2010).