Stem-loop sequence hsa-mir-3619

Accession

MI0016009 (change log)

Symbol

HGNC:MIR3619

Description

Homo sapiens miR-3619 stem-loop

Literature search

5 open access papers mention hsa-mir-3619
(8 sentences)

Stem-loop

        -a       -a u           c    g ag   g 
5' acggc  ucuuugc  c cagcaggcagg uggu c  ccc u
   |||||  |||||||  | ||||||||||| |||| |  ||| g
3' ugucg  aggaaug  g gucguccgucc acca g  ggg g
        gc       gg u           u    g --   u 

Deep sequencing

210 reads, 2.78 reads per million, 72 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr22: 46091044-46091126 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000318142 ; ATXN10-001; intron 3

  OTTHUMT00000322278 ; ATXN10-002; intron 3

  OTTHUMT00000322279 ; ATXN10-003; intron 3

  ENST00000381061 ; ATXN10-201; intron 2

  ENST00000252934 ; ATXN10-001; intron 3

  ENST00000498009 ; ATXN10-002; intron 3

  ENST00000470722 ; ATXN10-003; intron 3

Database links

• EntrezGene:MIR3619
• HGNC:MIR3619
• miRBase Tracker:MI0016009

Mature sequence hsa-miR-3619-5p

• Accession: MIMAT0017999
• Previous IDs: hsa-miR-3619
• Sequence: 16 - ucagcaggcaggcuggugcagc - 37
• Deep sequencing: 151 reads, 56 experiments
• Evidence: experimental; Illumina [1-2]
• Predicted targets:
  • TargetMiner:hsa-miR-3619-5p
  • TargetScanVert:hsa-miR-3619-5p
  • miRDB:hsa-miR-3619-5p

Mature sequence hsa-miR-3619-3p

• Accession: MIMAT0019219
• Sequence: 47 - gggaccauccugccugcugugg - 68
• Deep sequencing: 58 reads, 30 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-3619-3p
  • TargetScanVert:hsa-miR-3619-3p
  • miRDB:hsa-miR-3619-3p

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).