Stem-loop sequence hsa-mir-3613

Accession

MI0016003 (change log)

Symbol

HGNC:MIR3613

Description

Homo sapiens miR-3613 stem-loop

Gene family

MIPF0001411; mir-3613

Literature search

10 open access papers mention hsa-mir-3613
(23 sentences)

Stem-loop

   u  uug   u    uu    ua               g ugc 
5'  gg   ggu ugga  guug  cuuuuuuuuuuguuc u   a
    ||   ||| ||||  ||||  ||||||||||||||| |   u
3'  cu   cca acuu  caac  gaaaaaaaaaacaag a   u
   a  uca   c    cc    cc               g uuu 

Deep sequencing

144678 reads, 321 reads per million, 157 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr13: 49996415-49996501 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000044910 ; CAB39L-003; intron 3

  OTTHUMT00000335456 ; CAB39L-005; intron 3

  OTTHUMT00000335458 ; CAB39L-007; intron 3

  ENST00000347776 ; CAB39L-201; intron 2

  ENST00000409308 ; CAB39L-003; intron 3

  ENST00000410043 ; CAB39L-005; intron 3

  ENST00000470410 ; CAB39L-007; intron 3

Database links

• EntrezGene:MIR3613
• HGNC:MIR3613
• RNAcentral:URS000075BBF3_9606
• miRBase Tracker:MI0016003

Mature sequence hsa-miR-3613-5p

• Accession: MIMAT0017990
• Sequence: 16 - uguuguacuuuuuuuuuuguuc - 37
• Deep sequencing: 141419 reads, 150 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000045DBD_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3613-5p
  • TargetScanVert:hsa-miR-3613-5p
  • miRDB:hsa-miR-3613-5p

Mature sequence hsa-miR-3613-3p

• Accession: MIMAT0017991
• Sequence: 53 - acaaaaaaaaaagcccaacccuuc - 76
• Deep sequencing: 3251 reads, 148 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004EAE33_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3613-3p
  • TargetScanVert:hsa-miR-3613-3p
  • miRDB:hsa-miR-3613-3p

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).