miRBase entry: bta-mir-3596

Stem-loop bta-mir-3596


Accession
MI0015952
Description
Bos taurus bta-mir-3596 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
3 open access papers mention bta-mir-3596
(8 sentences)

Sequence

958156 reads, 7 reads per million, 77 experiments
cucgaggaaggcaguagguuguauaguuaucuuccgagggggcaacaucacuacccugaAACCACACAACCUACUACCUCAcc
.....(..(((.((((((((((...(((.((.....((((.............)))))))))...)))))))))).)))..).

Structure
cucga ga   c          aua   a  uuccg    ggcaa 
     g  agg aguagguugu   guu uc     aggg     c
     |  ||| ||||||||||   ||| ||     ||||     a
     c  UCC UCAUCCAACA   CAA ag     uccc     u
----c AC   A          CAC   -  -----    aucac 


Annotation confidence Not enough data
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Genome context
chr5: 117458609-117458691 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bta-mir-3596
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-3596

Accession MIMAT0016940
Description Bos taurus bta-miR-3596 mature miRNA
Sequence 60 - AACCACACAACCUACUACCUCA - 81
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19765282
    Identification and characterization of miRNAs expressed in the bovine ovary
    Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
    BMC Genomics (2009) 10:443