Stem-loop bta-mir-409b

Accession

MI0015946

Description

Bos taurus bta-mir-409b precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

4 open access papers mention bta-mir-409b
(4 sentences)

Sequence

33620 reads, 0 reads per million, 64 experiments

ugauaccgaaaaGGGGUUCACCGAGCAACAUUCgucguccagaugcaaaguugcucggguaaccucuccccgcguacca
((.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).))

Structure

  a   -  aaa       CA         A  -    g 
ug uac cg   aGGGGUU  CCGAGCAAC UU Cguc u
|| ||| ||   |||||||  ||||||||| || |||| c
ac aug gc   ucuccaa  ggcucguug aa guag c
  c   c  ccc       ug         a  c    a 

Annotation confidence Not enough data

Genome context

chr21: 67881619-67881697 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from bta-mir-409b

Mature bta-miR-409b

• Accession: MIMAT0016935
• Description: Bos taurus bta-miR-409b mature miRNA
• Sequence: 13 - GGGGUUCACCGAGCAACAUUC - 33
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19765282
   Identification and characterization of miRNAs expressed in the bovine ovary
   Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
   BMC Genomics (2009) 10:443