Stem-loop bta-mir-148c

Accession

MI0015944

Description

Bos taurus bta-mir-148c precursor miRNA

Gene family

MIPF0001027; mir-2957

Literature search

16 open access papers mention bta-mir-148c
(27 sentences)

Sequence

36446 reads, 1 reads per million, 70 experiments

cgggcCCAAGUUCUGUCAUGCACUGAcugcuccagagcccgagucggaguguaucacagaaccugggccgg
..((((((.(((((((.(((((((..((((((........))).)))))))))).))))))).))))))..

Structure

cg      A       C       GA   -   cag 
  ggcCCA GUUCUGU AUGCACU  cug cuc   a
  |||||| ||||||| |||||||  ||| |||    
  ccgggu caagaca uauguga  ggc gag   g
gg      c       c       --   u   ccc 

Annotation confidence Not enough data

Genome context

chr19: 39247037-39247107 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-148c

Mature bta-miR-148c

• Accession: MIMAT0016933
• Description: Bos taurus bta-miR-148c mature miRNA
• Sequence: 6 - CCAAGUUCUGUCAUGCACUGA - 26
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19765282
   Identification and characterization of miRNAs expressed in the bovine ovary
   Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
   BMC Genomics (2009) 10:443