miRBase entry: ssc-mir-484

Stem-loop ssc-mir-484


Accession
MI0015929
Description
Sus scrofa ssc-mir-484 precursor miRNA
Gene family
MIPF0000219; mir-484

Literature search
2 open access papers mention ssc-mir-484
(2 sentences)

Sequence

4 reads, 10 reads per million, 4 experiments
gcagccaucgucaggcucaguccccucccgauaaaccccuaaauagggaccuuCCCAGGGGGCGACCCAGGCUuuuuuggcaa
...((((..(((.((.((.(((((((...((.....((((....))))....))..))))))))).)).))).....))))..

Structure
gca    ---uc   a  c  a       ccc  uaaac    a 
   gcca     guc gg uc guccccu   ga     cccu a
   ||||     ||| || || |||||||   ||     ||||  
   cggu     CGG CC AG CGGGGGA   Cu     ggga a
-aa    uuuuU   A  C  -       -CC  -ucca    u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssc-miR-484

Accession MIMAT0017974
Description Sus scrofa ssc-miR-484 mature miRNA
Sequence 54 - CCCAGGGGGCGACCCAGGCU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275