Stem-loop sequence ssc-mir-421

AccessionMI0015925 (change log)
DescriptionSus scrofa miR-421 stem-loop
Gene family MIPF0000098; mir-95
Literature search

4 open access papers mention ssc-mir-421
(5 sentences)

Stem-loop 
   -   uu      -    uua            a   aaa 
5'  aca  guaggc cuca   aauguuuguuga uga   a
    |||  |||||| ||||   |||||||||||| |||   a
3'  ugu  cguccg gggu   uuacagacaacu acu   u
   g   cu      c    uaa            -   aag
Get sequence
Deep sequencing
111 reads, 0 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chrX: 67425032-67425109 [-]
sense
ENSSSCT00000019954 ; ssc-mir-421.1-201; exon 1
Clustered miRNAs
< 10kb from ssc-mir-421
ssc-mir-374bchrX: 67425186-67425265 [-]
ssc-mir-421chrX: 67425032-67425109 [-]
Database links

Mature sequence ssc-miR-421-5p

Accession MIMAT0017970
Previous IDsssc-miR-421
Sequence

11 -  

ccucauuaaauguuuguugaauga

 - 34

Get sequence
Deep sequencing12 reads, 5 experiments
Evidence experimental; Illumina [1-2]

Mature sequence ssc-miR-421-3p

Accession MIMAT0022962
Sequence

46 -  

aucaacagacauuaauugggcgc

 - 68

Get sequence
Deep sequencing97 reads, 15 experiments
Evidence experimental; Illumina [2]

References

1
PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).
2
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).