Stem-loop ssc-mir-490-1

Accession

MI0015914

Description

Sus scrofa ssc-mir-490-1 precursor miRNA

Gene family

MIPF0000229; mir-490

Literature search

2 open access papers mention ssc-mir-490-1
(2 sentences)

Sequence

6 reads, 10 reads per million, 5 experiments

uuguucgacaCCAUGGAUCCCCAGGUGGGUcacguuucaagauacacCAACCUGGAGGACUCCAUGCUGuugagcuguu
..((((((((.(((((((((((((((.(((...((........))))).)))))).))).)))))).))))))))....

Structure

--uu        C      -   -      G   cac  uuc 
    guucgaca CAUGGA UCC CCAGGU GGU   gu   a
    |||||||| |||||| ||| |||||| |||   ||    
    cgaguuGU GUACCU AGG GGUCCA Cca   ca   a
uugu        C      C   A      A   ---  uag 

Annotation confidence Not enough data

Genome context

chr18: 13361980-13362058 [-]

Mature ssc-miR-490-5p

• Accession: MIMAT0017959
• Description: Sus scrofa ssc-miR-490-5p mature miRNA
• Sequence: 11 - CCAUGGAUCCCCAGGUGGGU - 30
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-490-3p

• Accession: MIMAT0022960
• Description: Sus scrofa ssc-miR-490-3p mature miRNA
• Sequence: 48 - CAACCUGGAGGACUCCAUGCUG - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328