Stem-loop sequence ssc-mir-194b

Accession

MI0015905 (change log)

Previous IDs

ssc-mir-194

Description

Sus scrofa miR-194b stem-loop

Gene family

MIPF0000055; mir-194

Literature search

12 open access papers mention ssc-mir-194b
(33 sentences)

Stem-loop

   --    a    cu         a      g    cu  gc 
5'   cgcc ucag  guaacagcg cuccau ugga  gu  c
     |||| ||||  ||||||||| |||||| ||||  ||   
3'   gcgg aguu  cauugucgu gaggug accu  ua  c
   ca    c    uc         a      -    -u  ac 

Deep sequencing

30 reads, 0 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr10: 11786871-11786948 [-]	antisense ENSSSCT00000026014 ; intron 2 ENSSSCT00000011841 ; intron 12
chr10: 11962863-11962940 [+]	antisense ENSSSCT00000026014 ; intron 2 ENSSSCT00000011841 ; intron 12

Clustered miRNAs

< 10kb from ssc-mir-194b

• ssc-mir-215: chr10: 11963149-11963244 [+]
• ssc-mir-194b: chr10: 11962863-11962940 [+]
• ssc-mir-194b: chr10: 11786871-11786948 [-]
• ssc-mir-215: chr10: 11786567-11786662 [-]

Database links

• EntrezGene:MIR194
• miRBase Tracker:MI0015905

Mature sequence ssc-miR-194b-5p

• Accession: MIMAT0020365
• Previous IDs: ssc-miR-194-5p
• Sequence: 11 - uguaacagcgacuccaugugga - 32
• Deep sequencing: 29 reads, 8 experiments
• Evidence: experimental; Illumina [2]

Mature sequence ssc-miR-194b-3p

• Accession: MIMAT0017951
• Previous IDs: ssc-miR-194;ssc-miR-194-3p
• Sequence: 47 - ccaguggagaugcuguuaccuu - 68
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).