Stem-loop sequence hsa-mir-4252

Accession

MI0015864 (change log)

Symbol

HGNC:MIR4252

Description

Homo sapiens miR-4252 stem-loop

Literature search

1 open access papers mention hsa-mir-4252
(2 sentences)

Stem-loop

   --ug   g     ca   -ca     cca    a 
5'     ggg gcugg  gcu   ucagu   ggcc u
       ||| |||||  |||   |||||   ||||  
3'     ccc cgacc  cga   aguca   ccgg c
   cuaa   g     -a   cug     ---    u 

Deep sequencing

227 reads, 0 reads per million, 29 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 6429834-6429896 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000473098 ; ACOT7-009; intron 1

  OTTHUMT00000003773 ; ACOT7-001; intron 1

  OTTHUMT00000003774 ; ACOT7-002; intron 1

  OTTHUMT00000003775 ; ACOT7-003; intron 1

  OTTHUMT00000003778 ; ACOT7-006; intron 1

  ENST00000608083 ; ACOT7-009; intron 1

  ENST00000377855 ; ACOT7-001; intron 1

  ENST00000377860 ; ACOT7-002; intron 1

  ENST00000418124 ; ACOT7-003; intron 1

  ENST00000361521 ; ACOT7-006; intron 1

  ENST00000545482 ; ACOT7-202; intron 1

Database links

• EntrezGene:MIR4252
• HGNC:MIR4252
• miRBase Tracker:MI0015864

Mature sequence hsa-miR-4252

• Accession: MIMAT0016886
• Sequence: 35 - ggccacugagucagcacca - 53
• Deep sequencing: 9 reads, 3 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4252
  • TargetScanVert:hsa-miR-4252
  • miRDB:hsa-miR-4252
  • microrna.org:hsa-miR-4252

References

1. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).