Stem-loop ath-MIR3440b

Accession

MI0015818

Description

Arabidopsis thaliana ath-MIR3440b precursor miRNA

Gene family

MIPF0001127; MIR3440

Sequence

ucugguauuuugcucaaguauggUUUUCUUGGCCCAUCCACUUCuaauguguuuuguaacuaaugcaaaaugugcauuagaagUGGAUUGGUCAAGGGAAGCGUacuugugcaaaaugcggcagu
.((((((((((((.((((((((.(((((((((((.(((((((((((((((((((((((.....))))))))..))))))))))))))).))))))))))).)))))))).)))))))))..))).

Structure

u   --         u        g           C               --        a 
 cug  guauuuugc caaguaug UUUUCUUGGCC AUCCACUUCuaaugu  guuuugua c
 |||  ||||||||| |||||||| ||||||||||| |||||||||||||||  |||||||| u
 gac  cguaaaacg guucaUGC AAGGGAACUGG UAGGUgaagauuacg  uaaaacgu a
u   gg         u        G           U               ug        a 

Annotation confidence Not enough data

Genome context

chr3: 6217476-6217600 [+]

Mature ath-miR3440b-5p

• Accession: MIMAT0017945
• Description: Arabidopsis thaliana ath-miR3440b-5p mature miRNA
• Sequence: 24 - UUUUCUUGGCCCAUCCACUUC - 44
• Evidence: experimental ; Illumina [2]

Mature ath-miR3440b-3p

• Accession: MIMAT0017946
• Description: Arabidopsis thaliana ath-miR3440b-3p mature miRNA
• Sequence: 84 - UGGAUUGGUCAAGGGAAGCGU - 104
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103


2. PubMed ID: 20621980
   siRNAs from miRNA sites mediate DNA methylation of target genes
   "Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H"
   "Nucleic Acids Res (2010) 38:6883-6894