miRBase entry: aly-MIR4248b

Stem-loop aly-MIR4248b


Accession
MI0015811
Description
Arabidopsis lyrata aly-MIR4248b precursor miRNA
Gene family
MIPF0001108; MIR4208


Sequence

23 reads, 70 reads per million, 1 experiments
uguggugauauucaaaauauACAUUUUAUUUUUGGCAAUCAuuuuucuuuuauaaauucaaaagucauuuuucuuucuaaaaacacaauaauauauauauauauauauaaccaacguuugaguuuuaaaaaagaaaaaugaauuuauaagaaaaugauugccaaaaagaaaauguauauuuuguuauauuaccauaa
(((((((((((.(((((((((((((((.((((((((((((((((((...((((((((.......((((((((((((...(((((.(((...(((((((....)))))))........))).)))))...)))))))))))))))))))))))))))))))))))))).)))))))))))))))..))))))))))).

Structure
-           -u               A                  cuu        ucaaaag            cua     a   -----uaa       a 
 uguggugauau  caaaauauACAUUUU UUUUUGGCAAUCAuuuuu   uuauaaau       ucauuuuucuuu   aaaac caa        uauauau u
 |||||||||||  ||||||||||||||| ||||||||||||||||||   ||||||||       ||||||||||||   ||||| |||        |||||||  
 auaccauuaua  guuuuauauguaaaa aaaaaccguuaguaaaag   aauauuua       aguaaaaagaaa   uuuug guu        auauaua a
a           uu               g                  ---        -------            aaa     a   ugcaacca       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348719.1: 1283584-1283780 [-]

Database links

Mature aly-miR4248b

Accession MIMAT0017938
Description Arabidopsis lyrata aly-miR4248b mature miRNA
Sequence 21 - ACAUUUUAUUUUUGGCAAUCA - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103