Stem-loop aly-MIR4244

Accession

MI0015806

Description

Arabidopsis lyrata aly-MIR4244 precursor miRNA

Sequence

auuauccaaaguugucgucgUUGUUGAUUCCUUGGAGAUUGaauuugagauauucaacgaaauucgaucuccaaagaauccacaacaaugaaaacuuuguugaucau
......(((((((.((((.(((((.(((((.(((((((((((((((.............))))))))))))))).))))).))))).)))).)))))))........

Structure

--auuauc       g    c     U     C               gagau 
        caaaguu ucgu gUUGU GAUUC UUGGAGAUUGaauuu     a
        ||||||| |||| ||||| ||||| |||||||||||||||     u
        guuucaa agua caaca cuaag aaccucuagcuuaaa     u
uacuaguu       a    a     c     a               gcaac 

Annotation confidence Not enough data

Genome context

GL348720.1: 11474457-11474563 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR4244

Mature aly-miR4244

• Accession: MIMAT0017933
• Description: Arabidopsis lyrata aly-miR4244 mature miRNA
• Sequence: 21 - UUGUUGAUUCCUUGGAGAUUG - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103