miRBase entry: aly-MIR4243

Stem-loop aly-MIR4243


Accession
MI0015805
Description
Arabidopsis lyrata aly-MIR4243 precursor miRNA
Gene family
MIPF0001170; MIR4243


Sequence

uuaagaaccaugauuacaguUGAAAUUAUAGAUUUCGUACAugacaacaauuugcucuagucucacucucaagauuuugugguuguuguugcaguauucgagagaauacaugucaaauaugagagcaugcaugucauguacgaaaucuacaauuuaaacucuaauuaauggaugguucu
...(((((((((((((.((((.(((((.((((((((((((((((((......((((((....((((............)))).((((...(((((((((....)))))).)))..))))..))))))....)))))))))))))))))).))))).)))).))))).....))))))))

Structure
uua        -----     c    G     A                  acaauu      agucucacucucaagauuuuguggu    guu   -      g 
   agaaccau     gauua aguU AAAUU UAGAUUUCGUACAugaca      ugcucu                         uguu   gca guauuc a
   ||||||||     ||||| |||| ||||| ||||||||||||||||||      ||||||                         ||||   ||| ||||||  
   ucuuggua     uuaau ucaa uuuaa aucuaaagcauguacugu      acgaga                         auaa   ugu cauaag g
---        gguaa     c    a     c                  --acgu      -----------------------gu    -ac   a      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348720.1: 11472000-11472178 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR4243
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR4243

Accession MIMAT0017932
Description Arabidopsis lyrata aly-miR4243 mature miRNA
Sequence 21 - UGAAAUUAUAGAUUUCGUACA - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103