miRBase entry: aly-MIR4240

Stem-loop aly-MIR4240


Accession
MI0015802
Description
Arabidopsis lyrata aly-MIR4240 precursor miRNA
Gene family
MIPF0001198; MIR4240


Sequence

uuuucguagccgugaaguuaAUGGCUAGAGUGACUAGACCCGuaacauugcuaugaaaucauuugaacugaaauuuguugaucugcgguuuauuuucaagagaucaaaacgaagauaagugguggcacaaguuuacuuuagcgaauuuaucgcuauguuaucgggucuagcacucuauccacugauuucacgaccacgagccuc
..(((((.(.((((((((((.(((.(((((((.(((((((((((((((.((.(((((.((..(((((...((((((((.(..((((.((((((((((.............)))))))))).)))))))))))))..))))).)).))))).)).)))))).)))))))))))))))).))).)))))))))).).)))))....

Structure
--uu     a c          A   C       A         -      u  u     a  au     cug        u au    g          aagag 
    uucgu g cgugaaguua UGG UAGAGUG CUAGACCCG uaacau gc augaa uc  uugaa   aaauuugu g  cugc guuuauuuuc     a
    ||||| | |||||||||| ||| ||||||| ||||||||| |||||| || ||||| ||  |||||   |||||||| |  |||| ||||||||||     u
    gagca c gcacuuuagu acc aucucac gaucugggc auugua cg uauuu ag  gauuu   uuugaaca c  ggug ugaauagaag     c
cucc     c a          c   u       -         u      u  c     a  -c     -ca        - --    g          caaaa 


Annotation confidence Not enough data
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Genome context
GL348719.1: 10082347-10082550 [+]

Database links

Mature aly-miR4240

Accession MIMAT0017929
Description Arabidopsis lyrata aly-miR4240 mature miRNA
Sequence 21 - AUGGCUAGAGUGACUAGACCCG - 42
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103