miRBase entry: aly-MIR4233

Stem-loop aly-MIR4233


Accession
MI0015795
Description
Arabidopsis lyrata aly-MIR4233 precursor miRNA


Sequence

gacaaauguaagauauuuggaguugaugugggugauugguauguggugcugaacaauuggauccauggcuauauggauuauuuaccguaauaaaguguaaucuguaauguuuaacaucacauaCACAUCAUCAACAUCAACUCCaaaucuuuuguuuguccuuu
((((((((.(((((..(((((((((((((.((((((..((((((((((.((((((....((((((((....))))))))..(((((........).)))).......)))))).))))))))))..)))))).)))))))))))))))))).))))))))....

Structure
----        u     au             g      ug          c      ------------------------auug        g 
    gacaaaug aagau  uuggaguugaugu ggugau  guauguggug ugaaca                            gauccaug c
    |||||||| |||||  ||||||||||||| ||||||  |||||||||| ||||||                            ||||||||  
    cuguuugu uucua  aaCCUCAACUACA CUACUA  Cauacacuac auuugu                            uuagguau u
uuuc        u     --             A      CA          a      aaugucuaaugugaaauaaugccauuua        a 


Annotation confidence Not enough data
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Genome context
GL348718.1: 12714347-12714510 [+]

Database links

Mature aly-miR4233

Accession MIMAT0017922
Description Arabidopsis lyrata aly-miR4233 mature miRNA
Sequence 124 - CACAUCAUCAACAUCAACUCC - 144
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103