miRBase entry: aly-MIR4231

Stem-loop aly-MIR4231


Accession
MI0015792
Description
Arabidopsis lyrata aly-MIR4231 precursor miRNA


Sequence

7 reads, 209 reads per million, 1 experiments
aaucaggucauaaaggcaguUAGACCUUUGUGUUGCCAUCGuucuuggcgcucgcuucaccaaaagcgccaagaccgauggcaacaaggagguuuaaccgccuucugagcugauuuuu
((((((.(((..(((((.(((((((((((.(((((((((((.((((((((((............)))))))))).))))))))))).))))))))))).))))).))).))))))...

Structure
---      g   ua     a           G           u          cgcuu 
   aaucag uca  aaggc guUAGACCUUU UGUUGCCAUCG ucuuggcgcu     c
   |||||| |||  ||||| ||||||||||| ||||||||||| ||||||||||      
   uuaguc agu  uuccg caauuuggagg acaacgguagc agaaccgcga     a
uuu      g   -c     c           a           c          aaacc 


Annotation confidence Not enough data
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Genome context
GL348715.1: 22209462-22209579 [+]

Database links

Mature aly-miR4231

Accession MIMAT0017919
Description Arabidopsis lyrata aly-miR4231 mature miRNA
Sequence 21 - UAGACCUUUGUGUUGCCAUCG - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103